Create genetic groups regarding countries

Overall function to create genetic groups regarding countries

create_GG(
  psInputFile,
  psBreedsFile = NULL,
  psCountryFile = NULL,
  pminGroupSize = 250,
  pnumberOfYears = 6,
  pglobal_minyear = 1900,
  pglobal_maxyear = 2100,
  pdiffYear = 3,
  pshiftYear = 2,
  psOutputFile,
  pbLog = FALSE
)

Arguments

psInputFile	file including number of missing parents per year and breed
psBreedsFile	Read a breed grouping file
psCountryFile	country grouping file
pminGroupSize	minimum number of animals required per genetic group
pnumberOfYears	minimum number of birth years required per genetic group
pglobal_minyear	global minimum year
pglobal_maxyear	globar maximum year
pdiffYear	difference in birth years between parents of bulls and parents of dams
pshiftYear	shift between genetic groups of sire and genetic groups of dams; this is required so that they do not contain exactly the same animals
psOutputFile	genetic group csv-file

Arguments

Contents